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Flagging issue with indel inference and proposed temporary workaround
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1
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71
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June 8, 2026
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What is the correct ontology_curie (UBERON ID) to pull gtex_tissue metadata for GTEx Skeletal Muscle?
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2
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10
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June 8, 2026
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Reproducing AlphaGenome becnhmarks
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0
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19
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June 8, 2026
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Reproducing Chrombpnet becnhmarks
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2
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36
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June 8, 2026
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How to predict TF binding across genome
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0
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24
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June 5, 2026
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Status = StatusCode.INTERNAL error
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5
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45
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June 3, 2026
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Validity of raw vs. quantile scores for promoter variant effects when gene body extends beyond 16 kb sequence window
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1
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48
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June 2, 2026
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Inqiry on Splicing Junction Visualization and Data Extraction
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1
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31
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June 2, 2026
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Why do only some variants get splicing scores?
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1
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40
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June 1, 2026
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Any chance of zebrafish (danRer11) support?
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0
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16
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May 26, 2026
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AlphaGenome Viewer — a web UI for querying AlphaGenome without code
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1
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488
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May 24, 2026
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RNA-seq effects tend to be higher for variants to the left of the gene
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2
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66
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May 21, 2026
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HEK293T (EFO:0001184) DNase-seq and CAGE track availability
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1
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22
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May 20, 2026
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Issues encountered when calling the API
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1
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23
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May 20, 2026
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New Skill Alert: AlphaGenome Genomic Variant Analysis on Antigravity!
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0
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91
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May 20, 2026
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How can I use the output of histone modifications prediction to interpret the different/significant histone combination in each peak?
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0
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26
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May 20, 2026
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Variant scorer quantiles not implemented in ag_research
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4
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130
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May 15, 2026
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REF and ALT tracks look identical even with high quantile_score
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1
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73
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May 14, 2026
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Ablation Study Clarification: Tiling and Interval Definition for Splice Junctions
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2
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59
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May 12, 2026
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NN Architecture
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0
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44
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May 11, 2026
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Best way to aggregate AlphaGenome scores across tracks and modalities for variant prioritization?
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2
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111
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May 8, 2026
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Can the raw_score values be compared across different cell/sample types, transcription factors, and variants?
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2
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66
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May 5, 2026
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Support for Multi-Base Mutations in AlphaGenome
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3
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1288
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April 29, 2026
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Clarification on Borzoi tracks used for CAGI5 MPRA benchmarking
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0
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40
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April 29, 2026
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Can we change the width in the scorer function?
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4
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53
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April 29, 2026
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ISM implementation/efficiency
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4
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95
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April 28, 2026
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Sequence centering around non-variant position
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1
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36
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April 28, 2026
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Interest in building an R wrapper for the AlphaGenome API
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6
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109
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April 25, 2026
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REF and ALT tracks look identical even with high raw_score and quantile_score
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1
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93
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April 22, 2026
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Raw score calculation mismatch
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2
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59
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April 22, 2026
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