|
ISM implementation/efficiency
|
|
3
|
28
|
April 24, 2026
|
|
Can we change the width in the scorer function?
|
|
3
|
13
|
April 24, 2026
|
|
REF and ALT tracks look identical even with high raw_score and quantile_score
|
|
1
|
19
|
April 22, 2026
|
|
Raw score calculation mismatch
|
|
2
|
15
|
April 22, 2026
|
|
Interest in building an R wrapper for the AlphaGenome API
|
|
5
|
42
|
April 22, 2026
|
|
Availability of preprocessed training data
|
|
3
|
76
|
April 13, 2026
|
|
Splice Junction Plot - Please help me understand which ones are forward splicing(linear) and which ones are back splicing?
|
|
3
|
236
|
April 9, 2026
|
|
Is there a way to obtain embeddings?
|
|
3
|
1448
|
April 9, 2026
|
|
Variant scorer quantiles not implemented in ag_research
|
|
3
|
74
|
April 8, 2026
|
|
Validating AlphaGenome scores in Sports Physiology and High Performance
|
|
2
|
64
|
April 7, 2026
|
|
Any way to access embeddings?
|
|
5
|
1435
|
April 2, 2026
|
|
How to properly predict gene expression and histone changes for a large deletion using predict_sequence function
|
|
3
|
89
|
April 2, 2026
|
|
Estimate the functional impact of deletions (in Kb) using the alpha genome
|
|
3
|
147
|
March 25, 2026
|
|
Inquiry regarding availability of precomputed whole-genome output tracks
|
|
1
|
66
|
March 24, 2026
|
|
Retina tissue - missing from AlphaGenome tissue bank
|
|
1
|
79
|
March 20, 2026
|
|
Proposal for Analyzing Epigenetic Age Markers With AlphaGenome
|
|
7
|
1717
|
March 19, 2026
|
|
Exporting output data
|
|
3
|
80
|
March 19, 2026
|
|
Question about mm10 GTF annotation used in AlphaGenome
|
|
1
|
26
|
March 17, 2026
|
|
Alphagenome-ft: a fine-tuning package for alphagenome & Perturbation Assay Fine-Tuning Results
|
|
1
|
340
|
March 12, 2026
|
|
Issue with remote genome fasta files
|
|
3
|
40
|
March 12, 2026
|
|
Predicting variant effects in cell lines without ontology terms
|
|
3
|
81
|
March 11, 2026
|
|
Question on alphagenome’s RNA-seq Track: Relative Score or Absolute Value?
|
|
1
|
89
|
March 11, 2026
|
|
I'm an infj system level thinker asserting myself in the game
|
|
0
|
40
|
March 6, 2026
|
|
Why are there different tracks for different cell line
|
|
5
|
1311
|
March 6, 2026
|
|
Did AlphaGenome Use Reference Genome DNA or Sequencing Data to Predict Functional Genomic Tracks during training?
|
|
2
|
69
|
March 4, 2026
|
|
DNA methylation data for gene expression prediction
|
|
2
|
286
|
March 2, 2026
|
|
AlphaGenome Finetuning
|
|
1
|
376
|
March 2, 2026
|
|
Single variant genome position
|
|
1
|
62
|
February 26, 2026
|
|
How are people using Illumina bulk RNA-seq with AlphaGenome?
|
|
2
|
274
|
February 26, 2026
|
|
Seeking clarification on genome.Variant coordinate and strand conventions
|
|
1
|
72
|
February 26, 2026
|