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How to properly predict gene expression and histone changes for a large deletion using predict_sequence function
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2
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45
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March 31, 2026
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Estimate the functional impact of deletions (in Kb) using the alpha genome
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3
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97
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March 25, 2026
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Retina tissue - missing from AlphaGenome tissue bank
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1
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59
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March 20, 2026
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Inquiry regarding availability of precomputed whole-genome output tracks
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0
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48
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March 20, 2026
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Proposal for Analyzing Epigenetic Age Markers With AlphaGenome
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7
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1671
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March 19, 2026
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Exporting output data
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3
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61
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March 19, 2026
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Question about mm10 GTF annotation used in AlphaGenome
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1
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21
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March 17, 2026
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Alphagenome-ft: a fine-tuning package for alphagenome & Perturbation Assay Fine-Tuning Results
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1
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234
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March 12, 2026
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Issue with remote genome fasta files
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3
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29
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March 12, 2026
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Predicting variant effects in cell lines without ontology terms
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3
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66
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March 11, 2026
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Question on alphagenome’s RNA-seq Track: Relative Score or Absolute Value?
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1
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69
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March 11, 2026
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I'm an infj system level thinker asserting myself in the game
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0
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32
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March 6, 2026
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Why are there different tracks for different cell line
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5
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1287
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March 6, 2026
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Variant scorer quantiles not implemented in ag_research
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1
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36
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March 4, 2026
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Did AlphaGenome Use Reference Genome DNA or Sequencing Data to Predict Functional Genomic Tracks during training?
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2
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59
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March 4, 2026
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DNA methylation data for gene expression prediction
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2
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261
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March 2, 2026
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AlphaGenome Finetuning
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1
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310
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March 2, 2026
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Single variant genome position
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1
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48
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February 26, 2026
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How are people using Illumina bulk RNA-seq with AlphaGenome?
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2
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267
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February 26, 2026
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Seeking clarification on genome.Variant coordinate and strand conventions
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1
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63
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February 26, 2026
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Typos in "Example analysis workflow: TAL1 locus"
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3
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50
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February 25, 2026
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LoRA Finetuning on Custom CUT&Tag Dataset
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4
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199
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February 24, 2026
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APA Predict Variant Effects
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3
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1309
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February 24, 2026
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Val and test in FOLD_1 compared to Borzoi
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2
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132
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February 24, 2026
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Missing variant annotations after scoring
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1
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23
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February 24, 2026
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Predicted ALT expression and the REF expression separately
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1
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100
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February 24, 2026
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gene in skeletal tissue or osteoclast
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1
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49
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February 24, 2026
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Finding the most relevant ontology CURIE
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1
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824
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February 24, 2026
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How to fine-tune for new downstream tasks (such as identifying polyA sites) and extract embeddings?
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1
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61
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February 24, 2026
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Mouse reference genome
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5
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904
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February 24, 2026
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