AlphaGenome

Topic	Replies	Views	Activity
AlphaGenome: Nature Publication & weights for academic use Announcements AlphaGenome is now published in Nature, and we’ve released the model and weights for academic use. :page_facing_up: Read the Paper :rocket: Get the Model Code & Weights :television: Watch AlphaGenome authors talk ab…	1	471	January 28, 2026
Multiple Deletions Help & Support	1	19	February 6, 2026
Enhancer-gene prediction Help & Support	1	25	February 6, 2026
gene in skeletal tissue or osteoclast Help & Support	0	11	February 6, 2026
Run alphagenome locally Help & Support	2	42	February 6, 2026
Model Coverage Matrix for Cell Types and Assays Help & Support	2	16	February 5, 2026
Tutorial for Training on New Data? Feedback & Feature Requests	0	14	February 5, 2026
DNA methylation data for gene expression prediction Feedback & Feature Requests	1	28	February 5, 2026
Using API to Reproduce Figure 4(b): ISM for Alternative Allele Help & Support	3	646	February 5, 2026
Use alphagenome prediect wheat genome Feedback & Feature Requests testing	2	1445	February 5, 2026
Can I cache AlphaGenome data? Help & Support	0	20	February 4, 2026
Is full fine-tuning feasible on a single H100? Help & Support	1	82	February 4, 2026
Inference speed on NVIDIA H100 GPU Help & Support	1	39	February 4, 2026
Getting a free API key Help & Support	2	98	February 4, 2026
Predicted ALT expression and the REF expression separately Help & Support	0	16	February 3, 2026
Feature request: flexible window width in CenterMaskScorer Feedback & Feature Requests	0	9	February 3, 2026
Feature request: custom transcripts in RNA-seq variant scoring Feedback & Feature Requests	0	15	February 3, 2026
Bananas in ATAC output Feedback & Feature Requests	0	35	February 3, 2026
Is there a way to obtain embeddings? Feedback & Feature Requests	2	1287	February 1, 2026
People Introductions Community	21	4257	January 31, 2026
Overlap Save and A.I Forum feedback	0	20	January 31, 2026
101 video feedback Feedback & Feature Requests	3	127	January 30, 2026
How are people using Illumina bulk RNA-seq with AlphaGenome? Help & Support	1	84	January 29, 2026
Splice Junction Plot - Please help me understand which ones are forward splicing(linear) and which ones are back splicing? Help & Support	2	66	January 29, 2026
Understanding the AlphaGenome generated Result of ANRIL(lncRNA) variants' impact Help & Support	2	105	January 28, 2026
How to use a different GENCODE version (e.g., v49) with score_variant()? Help & Support	1	80	January 28, 2026
Suggestion for a new functionality of variant scorer Feedback & Feature Requests	3	804	January 27, 2026
How to get signed (non-absolute) raw scores for splicing variants? Help & Support	2	66	January 27, 2026
Seeking Guidance on Relevant AlphaGenome Features for RNU4-2 Variant Interpretation Community	2	383	January 27, 2026
Recapitulating tissue-specific patterns Community	1	563	December 23, 2025

AlphaGenome: Nature Publication & weights for academic use

AlphaGenome is now published in Nature, and we’ve released the model and weights for academic use. :page_facing_up: Read the Paper :rocket: Get the Model Code & Weights :television: Watch AlphaGenome authors talk ab…