|
Ablation Study Clarification: Tiling and Interval Definition for Splice Junctions
|
|
2
|
37
|
May 12, 2026
|
|
NN Architecture
|
|
0
|
6
|
May 11, 2026
|
|
Best way to aggregate AlphaGenome scores across tracks and modalities for variant prioritization?
|
|
2
|
63
|
May 8, 2026
|
|
Can the raw_score values be compared across different cell/sample types, transcription factors, and variants?
|
|
2
|
30
|
May 5, 2026
|
|
Support for Multi-Base Mutations in AlphaGenome
|
|
3
|
1262
|
April 29, 2026
|
|
Clarification on Borzoi tracks used for CAGI5 MPRA benchmarking
|
|
0
|
24
|
April 29, 2026
|
|
Can we change the width in the scorer function?
|
|
4
|
34
|
April 29, 2026
|
|
ISM implementation/efficiency
|
|
4
|
71
|
April 28, 2026
|
|
Sequence centering around non-variant position
|
|
1
|
25
|
April 28, 2026
|
|
RNA-seq effects tend to be higher for variants to the left of the gene
|
|
1
|
23
|
April 27, 2026
|
|
REF and ALT tracks look identical even with high quantile_score
|
|
0
|
26
|
April 27, 2026
|
|
Interest in building an R wrapper for the AlphaGenome API
|
|
6
|
78
|
April 25, 2026
|
|
REF and ALT tracks look identical even with high raw_score and quantile_score
|
|
1
|
46
|
April 22, 2026
|
|
Raw score calculation mismatch
|
|
2
|
40
|
April 22, 2026
|
|
Availability of preprocessed training data
|
|
3
|
100
|
April 13, 2026
|
|
Splice Junction Plot - Please help me understand which ones are forward splicing(linear) and which ones are back splicing?
|
|
3
|
249
|
April 9, 2026
|
|
Is there a way to obtain embeddings?
|
|
3
|
1475
|
April 9, 2026
|
|
Variant scorer quantiles not implemented in ag_research
|
|
3
|
85
|
April 8, 2026
|
|
Validating AlphaGenome scores in Sports Physiology and High Performance
|
|
2
|
75
|
April 7, 2026
|
|
Any way to access embeddings?
|
|
5
|
1452
|
April 2, 2026
|
|
How to properly predict gene expression and histone changes for a large deletion using predict_sequence function
|
|
3
|
106
|
April 2, 2026
|
|
Estimate the functional impact of deletions (in Kb) using the alpha genome
|
|
3
|
163
|
March 25, 2026
|
|
Inquiry regarding availability of precomputed whole-genome output tracks
|
|
1
|
76
|
March 24, 2026
|
|
Retina tissue - missing from AlphaGenome tissue bank
|
|
1
|
94
|
March 20, 2026
|
|
Proposal for Analyzing Epigenetic Age Markers With AlphaGenome
|
|
7
|
1731
|
March 19, 2026
|
|
Exporting output data
|
|
3
|
93
|
March 19, 2026
|
|
Question about mm10 GTF annotation used in AlphaGenome
|
|
1
|
29
|
March 17, 2026
|
|
Alphagenome-ft: a fine-tuning package for alphagenome & Perturbation Assay Fine-Tuning Results
|
|
1
|
418
|
March 12, 2026
|
|
Issue with remote genome fasta files
|
|
3
|
46
|
March 12, 2026
|
|
Predicting variant effects in cell lines without ontology terms
|
|
3
|
100
|
March 11, 2026
|