|
How to properly predict gene expression and histone changes for a large deletion using predict_sequence function
|
|
1
|
25
|
March 26, 2026
|
|
Estimate the functional impact of deletions (in Kb) using the alpha genome
|
|
3
|
83
|
March 25, 2026
|
|
Retina tissue - missing from AlphaGenome tissue bank
|
|
1
|
52
|
March 20, 2026
|
|
Inquiry regarding availability of precomputed whole-genome output tracks
|
|
0
|
39
|
March 20, 2026
|
|
Proposal for Analyzing Epigenetic Age Markers With AlphaGenome
|
|
7
|
1664
|
March 19, 2026
|
|
Exporting output data
|
|
3
|
57
|
March 19, 2026
|
|
Question about mm10 GTF annotation used in AlphaGenome
|
|
1
|
21
|
March 17, 2026
|
|
Alphagenome-ft: a fine-tuning package for alphagenome & Perturbation Assay Fine-Tuning Results
|
|
1
|
215
|
March 12, 2026
|
|
Issue with remote genome fasta files
|
|
3
|
26
|
March 12, 2026
|
|
Predicting variant effects in cell lines without ontology terms
|
|
3
|
63
|
March 11, 2026
|
|
Question on alphagenome’s RNA-seq Track: Relative Score or Absolute Value?
|
|
1
|
66
|
March 11, 2026
|
|
I'm an infj system level thinker asserting myself in the game
|
|
0
|
31
|
March 6, 2026
|
|
Why are there different tracks for different cell line
|
|
5
|
1284
|
March 6, 2026
|
|
Variant scorer quantiles not implemented in ag_research
|
|
1
|
34
|
March 4, 2026
|
|
Did AlphaGenome Use Reference Genome DNA or Sequencing Data to Predict Functional Genomic Tracks during training?
|
|
2
|
58
|
March 4, 2026
|
|
DNA methylation data for gene expression prediction
|
|
2
|
256
|
March 2, 2026
|
|
AlphaGenome Finetuning
|
|
1
|
294
|
March 2, 2026
|
|
Single variant genome position
|
|
1
|
46
|
February 26, 2026
|
|
How are people using Illumina bulk RNA-seq with AlphaGenome?
|
|
2
|
263
|
February 26, 2026
|
|
Seeking clarification on genome.Variant coordinate and strand conventions
|
|
1
|
63
|
February 26, 2026
|
|
Typos in "Example analysis workflow: TAL1 locus"
|
|
3
|
50
|
February 25, 2026
|
|
LoRA Finetuning on Custom CUT&Tag Dataset
|
|
4
|
194
|
February 24, 2026
|
|
APA Predict Variant Effects
|
|
3
|
1307
|
February 24, 2026
|
|
Val and test in FOLD_1 compared to Borzoi
|
|
2
|
131
|
February 24, 2026
|
|
Missing variant annotations after scoring
|
|
1
|
23
|
February 24, 2026
|
|
Predicted ALT expression and the REF expression separately
|
|
1
|
99
|
February 24, 2026
|
|
gene in skeletal tissue or osteoclast
|
|
1
|
49
|
February 24, 2026
|
|
Finding the most relevant ontology CURIE
|
|
1
|
823
|
February 24, 2026
|
|
How to fine-tune for new downstream tasks (such as identifying polyA sites) and extract embeddings?
|
|
1
|
57
|
February 24, 2026
|
|
Mouse reference genome
|
|
5
|
903
|
February 24, 2026
|