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Ablation Study Clarification: Tiling and Interval Definition for Splice Junctions
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2
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38
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May 12, 2026
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NN Architecture
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0
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7
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May 11, 2026
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Best way to aggregate AlphaGenome scores across tracks and modalities for variant prioritization?
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2
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64
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May 8, 2026
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Can the raw_score values be compared across different cell/sample types, transcription factors, and variants?
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2
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32
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May 5, 2026
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Support for Multi-Base Mutations in AlphaGenome
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3
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1263
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April 29, 2026
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Clarification on Borzoi tracks used for CAGI5 MPRA benchmarking
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0
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25
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April 29, 2026
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Can we change the width in the scorer function?
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4
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34
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April 29, 2026
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ISM implementation/efficiency
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4
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75
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April 28, 2026
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Sequence centering around non-variant position
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1
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25
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April 28, 2026
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RNA-seq effects tend to be higher for variants to the left of the gene
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1
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24
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April 27, 2026
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REF and ALT tracks look identical even with high quantile_score
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0
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26
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April 27, 2026
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Interest in building an R wrapper for the AlphaGenome API
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6
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78
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April 25, 2026
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REF and ALT tracks look identical even with high raw_score and quantile_score
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1
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46
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April 22, 2026
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Raw score calculation mismatch
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2
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41
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April 22, 2026
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Availability of preprocessed training data
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3
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101
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April 13, 2026
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Splice Junction Plot - Please help me understand which ones are forward splicing(linear) and which ones are back splicing?
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3
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250
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April 9, 2026
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Is there a way to obtain embeddings?
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3
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1476
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April 9, 2026
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Variant scorer quantiles not implemented in ag_research
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3
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85
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April 8, 2026
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Validating AlphaGenome scores in Sports Physiology and High Performance
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2
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75
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April 7, 2026
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Any way to access embeddings?
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5
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1453
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April 2, 2026
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How to properly predict gene expression and histone changes for a large deletion using predict_sequence function
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3
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107
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April 2, 2026
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Estimate the functional impact of deletions (in Kb) using the alpha genome
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3
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163
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March 25, 2026
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Inquiry regarding availability of precomputed whole-genome output tracks
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1
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76
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March 24, 2026
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Retina tissue - missing from AlphaGenome tissue bank
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1
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94
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March 20, 2026
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Proposal for Analyzing Epigenetic Age Markers With AlphaGenome
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7
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1731
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March 19, 2026
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Exporting output data
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3
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93
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March 19, 2026
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Question about mm10 GTF annotation used in AlphaGenome
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1
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29
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March 17, 2026
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Alphagenome-ft: a fine-tuning package for alphagenome & Perturbation Assay Fine-Tuning Results
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1
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418
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March 12, 2026
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Issue with remote genome fasta files
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3
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46
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March 12, 2026
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Predicting variant effects in cell lines without ontology terms
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3
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101
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March 11, 2026
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