Any chance of zebrafish (danRer11) support?

Help & Support
1

Hi,
Thank you for AlphaGenome, it’s been wonderful to use!
I’m a PhD student, and my research focuses on 3D genome architecture and cis-regulatory control of zebrafish regeneration. Quick question: is zebrafish (danRer11) support something that might be possible down the line? Right now I have to lift my coordinates over to hg38 first — which struggles exactly at the non-coding enhancers I care about most.
Zebrafishw is a hugely popular model, and DANIO-CODE has already gathered lots of ATAC-seq, ChIP-seq, and RNA-seq data in the same modalities you predict, so the training data is largely there.

Would love to know if others would find this useful too. Thanks so much for considering it!

2

Hi There!

Thanks for reaching out and sharing more about your research on zebrafish regeneration.

We are unable to share any details about our roadmap. Because the AlphaGenome model source code and weights are freely available, you could try to fine-tune the model on the datasets you’ve listed.

Kind regards,
Tumi