How to fine-tune for new downstream tasks (such as identifying polyA sites) and extract embeddings?

Help & Support
1

Hello, I am very interested in fine-tuning new downstream tasks (such as identifying polyA sites, RNA editing sites, etc.). I would like to ask if AlphaGenome currently supports this feature and whether it will provide related fine-tuning scripts in the future. Thank you.

2

Hi Zipel,
Thank you for reaching out.

You can refer to the AlphaGenome manuscript for details on training and evaluation, and the new colab notebook for fine-tuning on custom genomic tracks here

Thank you