|
Issues encountered when calling the API
|
|
1
|
71
|
May 20, 2026
|
|
Variant scorer quantiles not implemented in ag_research
|
|
4
|
203
|
May 15, 2026
|
|
REF and ALT tracks look identical even with high quantile_score
|
|
1
|
131
|
May 14, 2026
|
|
Ablation Study Clarification: Tiling and Interval Definition for Splice Junctions
|
|
2
|
102
|
May 12, 2026
|
|
Best way to aggregate AlphaGenome scores across tracks and modalities for variant prioritization?
|
|
2
|
240
|
May 8, 2026
|
|
Can the raw_score values be compared across different cell/sample types, transcription factors, and variants?
|
|
2
|
136
|
May 5, 2026
|
|
Clarification on Borzoi tracks used for CAGI5 MPRA benchmarking
|
|
0
|
78
|
April 29, 2026
|
|
Can we change the width in the scorer function?
|
|
4
|
105
|
April 29, 2026
|
|
ISM implementation/efficiency
|
|
4
|
181
|
April 28, 2026
|
|
Sequence centering around non-variant position
|
|
1
|
56
|
April 28, 2026
|
|
REF and ALT tracks look identical even with high raw_score and quantile_score
|
|
1
|
157
|
April 22, 2026
|
|
Raw score calculation mismatch
|
|
2
|
102
|
April 22, 2026
|
|
Availability of preprocessed training data
|
|
3
|
218
|
April 13, 2026
|
|
Splice Junction Plot - Please help me understand which ones are forward splicing(linear) and which ones are back splicing?
|
|
3
|
307
|
April 9, 2026
|
|
Any way to access embeddings?
|
|
5
|
1554
|
April 2, 2026
|
|
How to properly predict gene expression and histone changes for a large deletion using predict_sequence function
|
|
3
|
211
|
April 2, 2026
|
|
Estimate the functional impact of deletions (in Kb) using the alpha genome
|
|
3
|
291
|
March 25, 2026
|
|
Exporting output data
|
|
3
|
166
|
March 19, 2026
|
|
Question about mm10 GTF annotation used in AlphaGenome
|
|
1
|
90
|
March 17, 2026
|
|
Issue with remote genome fasta files
|
|
3
|
119
|
March 12, 2026
|
|
Predicting variant effects in cell lines without ontology terms
|
|
3
|
195
|
March 11, 2026
|
|
Question on alphagenome’s RNA-seq Track: Relative Score or Absolute Value?
|
|
1
|
188
|
March 11, 2026
|
|
I'm an infj system level thinker asserting myself in the game
|
|
0
|
76
|
March 6, 2026
|
|
Why are there different tracks for different cell line
|
|
5
|
1425
|
March 6, 2026
|
|
Did AlphaGenome Use Reference Genome DNA or Sequencing Data to Predict Functional Genomic Tracks during training?
|
|
2
|
174
|
March 4, 2026
|
|
Single variant genome position
|
|
1
|
122
|
February 26, 2026
|
|
How are people using Illumina bulk RNA-seq with AlphaGenome?
|
|
2
|
346
|
February 26, 2026
|
|
Seeking clarification on genome.Variant coordinate and strand conventions
|
|
1
|
133
|
February 26, 2026
|
|
LoRA Finetuning on Custom CUT&Tag Dataset
|
|
4
|
318
|
February 24, 2026
|
|
APA Predict Variant Effects
|
|
3
|
1367
|
February 24, 2026
|