Borzoi folds Correspondence to AlphaGenome folds

Help & Support
1

Hi! Could you, please, clarify how Borzoi folds correspond to AlphaGenome folds? Is there a table or mapping showing which Borzoi fold corresponds to which AlphaGenome fold?

Thanks!

2

Hello!

You can find the code to map from model version → borzoi folds here: alphagenome/src/alphagenome/data/fold_intervals.py at main · google-deepmind/alphagenome · GitHub

For example, to get the intervals used to train FOLD_0:

from alphagenome.data import fold_intervals
from alphagenome.models import dna_client


df = fold_intervals.get_fold_intervals(
    dna_client.ModelVersion.FOLD_0,
    dna_client.Organism.HOMO_SAPIENS,
    fold_intervals.Subset.TRAIN,
)

Hope that helps!

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